Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

T

target - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

target - Variable in class edu.claflin.finder.logic.Edge

The node representing the target.

terminalLogs - Variable in class edu.claflin.finder.log.LogUtil

The HashMap used for determining which of the logging outputs are logged to the terminal.

Tester - Class in edu.claflin.finder.algo.clustering.struct.infomap_struct

Tester - Class in edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct

Tester - Class in edu.claflin.finder.algo.clustering.struct.louvain_struct

Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.infomap_struct.Tester

Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

testFile(File) - Static method in class edu.claflin.finder.io.graph.SIFGraphIO

Tests to see if a File is a valid graph file.

testFile(File) - Static method in class edu.claflin.finder.io.graph.SimpleGraphIO

Tests to see if a File is a valid graph file.

testRandomWalker(Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

threshold - Variable in class edu.claflin.finder.algo.spanningtree.ExtremumSpanningTree

times(double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Multiply a matrix by a scalar, C = s*A

times(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Linear algebraic matrix multiplication, A * B

timesEquals(double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Multiply a matrix by a scalar in place, A = s*A

TOP - Static variable in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

toString() - Method in enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS

toString() - Method in class edu.claflin.finder.algo.ArgumentsBundle

toString() - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch

toString() - Method in class edu.claflin.finder.algo.BronKerbosch

toString() - Method in class edu.claflin.finder.algo.Bundle

toString() - Method in class edu.claflin.finder.algo.clustering.Communities

toString() - Method in class edu.claflin.finder.algo.clustering.FastGreedy

toString() - Method in class edu.claflin.finder.algo.clustering.GirvanNewman

toString() - Method in class edu.claflin.finder.algo.clustering.Infomap

toString() - Method in class edu.claflin.finder.algo.clustering.LabelPropagation

toString() - Method in class edu.claflin.finder.algo.clustering.LeadingEigenvector

toString() - Method in class edu.claflin.finder.algo.clustering.Louvain

toString() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Gets an inorder String representation of the BinarySearchTree.

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG

toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

toString() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality.BetweennessData

toString() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

toString() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo

toString() - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

toString() - Method in class edu.claflin.finder.algo.clustering.Walktrap

toString() - Method in class edu.claflin.finder.algo.ConnectedComponentsDFS

toString() - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch

toString() - Method in class edu.claflin.finder.algo.shortestpath.DijkstraShortestPath

toString() - Method in class edu.claflin.finder.algo.spanningtree.Kruskal

toString() - Method in class edu.claflin.finder.algo.spanningtree.Prim

toString() - Method in enum edu.claflin.finder.log.LogLevel

toString() - Method in enum edu.claflin.finder.log.LogType

Used to get a user friendly version of the LogType.

toString() - Method in class edu.claflin.finder.logic.cond.BipartiteCondition

toString() - Method in class edu.claflin.finder.logic.cond.CliqueCondition

toString() - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition

toString() - Method in class edu.claflin.finder.logic.ConditionedGraph

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

toString() - Method in class edu.claflin.finder.logic.Edge

toString() - Method in class edu.claflin.finder.logic.Graph

Returns a String representation of the Graph.

toString() - Method in class edu.claflin.finder.logic.Node

toString() - Method in class edu.claflin.finder.struct.DisjointSet

toString(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Recursive implementation of inorder toString.

toStringNameless() - Method in class edu.claflin.finder.logic.Graph

totalExitCodes(Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

totalExitWeight - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

totalModuleCode(Map<Integer, List<Node>>, Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

totalModuleFreq(Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

totalModuleNodeFreq(List<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

totalNodeFreq(List<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength

totalWeight - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

tql2() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

trace() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Matrix trace.

transpose() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Matrix transpose.

transpose(int, int) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

transpose(Node, Node) - Method in class edu.claflin.finder.logic.Graph

Transposes the specified nodes.

transpose(String, String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

traverseGraph - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

tred2() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

tree - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

tree - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain

TreeNode<T extends TreeNodeInfo> - Class in edu.claflin.finder.algo.clustering.struct

The basic unit of the BinarySearchTree.

TreeNode() - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode

TreeNode(T) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode

Create an empty TreeNode.

TreeNode(T, TreeNode<T>, TreeNode<T>) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode

TreeNodeInfo - Class in edu.claflin.finder.algo.clustering.struct

TreeNodeInfo(int) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo

TreeNodeInfoFG - Class in edu.claflin.finder.algo.clustering.struct.fast_greedy_struct

TreeNodeInfoFG(int, double) - Constructor for class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG

trees - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form